member expertise

When you join CCPB, academic members are asked to provide details of their research interests so that we can foster research collaboration and create an expertise list.

By clicking on the academic's name you will be taken to their research pages where you can find out more about their research interests and their contact details, should you wish to get in touch.

UK modelling groups

Jamshed Anwar, University of Bradford - molecular simulations of membranes; drug and gene delivery; free energy calculations; and phase equilibra

Stefan Auer, University of Leeds - phase transitions, nucleation, colloids, polymers, peptides, proteins, membranes, computer simulations

Perdita Barran, University of Edinburgh - use of a combination of experimental gas phase techniques, molecular modelling and solution chemistry methods to interrogate conformations of proteins, peptides and other natural products

Neil Berry, University of Liverpool - structure and ligand based drug design; modelling reaction mechanisms

Robert Best, University of Cambridge - protein folding, protein-nucleic acid interactions, helix-coil transition, transition-path sampling, reaction co-ordinates

Phil Biggin, University of Oxford - computational studies of receptors, in particular ionotrophic glutamate and nicotinic acetylcholine receptors

Veronica Brazdova, University College London - DFT, linear scaling DFT, biosystems

David Burke, University of Cambridge - bioinformatics: fold recognition; homology modelling; drug design

Leo Caves, University of York - structure, mechanics and functional relationships of biomolecules; simulation of complex biosystems; methods and tools for exploratory data analysis and visualisation for biosystems

Peter Coveney, University College London - theoretical and computational science;, atomistic, mesoscale and multiscale modelling;, statistical mechanic;, high performance computing and visualisation

Andrew Dalby, University of Oxford - molecular dynamics models of protein folding diseases; stochastic simulations; network models; SNP modelling

Rob Deeth, University of Warwick - modelling transition metal centres in biological systems

Nora de Leeuw, University College London - modelling bone tissues, collagen, apatite material, bio-glasses

Christopher Dobson, University of Cambridge - investigating structures and properties of biological molecules using both experimental and computational techniques

Paul Driscoll, MRC National Institute for Medical Research - NMR Spectroscopy of proteins

Jon Essex, University of Southampton - protein conformational change; molecular recognition and free energy calculations; the membrane environment; methodological improvements

Jonathan Goodman, University of Cambridge - investigation of organic reactivity and structure using both experimental and computational methods; development of chemical informatics techniques to help this process

Guy Grant, University of Cambridge - reduced dimension representations of protein structure;calculation of biological reduction potentials

Paul Grosvenor, Queen Mary, University of London - protein function prediction of unannotated hydrolases from pathogenic bacteria

Sarah Harris, University of Leeds - thermodynamics of complex biomolecules from a physical point of view; quantum information

Steven Hayward, University of East Anglia - molecular dynamics simulations; protein domain motions

John Helliwell, University of Manchester - Crystallography, biophysics, structural chemistry, proteins, lectins, enzymes, synchrotron radiation, neutron sources

Richard Henchman, University of Manchester - free energy; solvation and binding; sampling methods

Jonathan Hirst, University of Nottingham - ab initio calculations of the electronic excited states of molecules; electronic structure and circular dichroism of proteins; vibrational spectroscopy of proteins; protein folding and evolution; bioinformatics; computer-aided drug design; molecular dynamics simulations

Steve Homans, University of Leeds - using NMR and molecular modelling to study structure, dynamics and thermodynamics of ligand-protein interactions

David Huggins, University of Cambridge - molecular design, MMPBSA calculations, software development, fragment screenning

Syma Khalid, University of Southampton - atomistic and coarse grain simulations of biological molecules and systems

Paul King, Birkbeck College, University of London - drug design based on methods of quantum mechanics and molecular simulation; development of methods for the determination of free energy from computer simulation; design and simulation of modified DNA sequences as potential therapeutic agents

Andreas Kukol, University of Hertfordshire - structure and function of membrane proteins; biosensors for label free detection; molecular modelling; computational biochemistry; site-specific infrared dichroism; ATR-FTIR spectroscopy

Charlie Laughton, University of Nottingham - Drug-DNA recognition; protein flexibility and ligand recognition; interactions between DNA and protein; new simulation and analysis methods

Frederic Leymarie, Goldsmiths College - 3D visualisation for proteomics, 3D shape representation, computational evolution

Chris Lorenz, Kings College London - use of molecular dynamics simulations to study the behaviour of proteins near interfaces

Lora Mak, Institute of Food Research, Norwich - computational chemical systems biology, cheminformatics, structural bioinformatics, natural products

Fred Manby, University of Bristol - electronic structure theory, QM/MM, simulation

Andrew Martin, University College London - antibody sequence, structure and function; effects of mutations on protein structure and function; protein modelling

John Mitchell, University of Cambridge - enzyme catalysis, protein-ligand interactions, molecular evolution, prediction of solubility and other molecular properties

Carla Molteni, Kings College London - condensed matter theory; first principles and classical molecular dynamics simulations of materials and biomolecules; excitation in polymers and photoactive proteins; mutagenesis computer experiements in ligand-gated ion channels

Richard Morris, John Innes Centre, Norwich - protein structure and function; pattern recognition; kinetics; biological pattern formation

Adrian Mulholland, University of Bristol - modelling biological molecules; simulating enzyme-catalysed reactions

Agnes Noy, University of Sheffield - DNA dynamics, course grained DNA

Emanuele Paci, University of Leeds - protein folding, unfolding, aggregation

Roger Parker, Institute of Food Research, Norwich - biopolymer interactions; polyelectrolyte interactions; multiscale modelling

Mike Payne, University of Cambridge - quantum mechanical simulations

James Platts, University of Cardiff - theoretical studies of hydrogen bonding and other intermolecular interactions; prediction of solvation and transport of pharmaceutical and industrial compounds; theoretical investigation of bonding and reactivity

Nick Quirke, Imperial College - nanomaterials, nanotoxicity, molecular dynamics

Chris Reynolds, University of Essex - development of methods in computational chemistry and bioinformatics including electrostatics, polarization, docking and hybrid QM/MM methods; to study G-protein coupled receptors, protein folding and transition metal based anti-cancer drugs

Dave Ritchie, University of Aberdeen - bioinformatics, chemoinformatics, systems biology, computational biology, protein docking

Mark Sansom, University of Oxford - ion channels and membrane proteins: simulations, modelling and bioinformatics

Hans Martin Senn, University of Glasgow - enzymatic reaction mechanisms; first-principles and QM/MM molecular dynamics; sampling techniques and free-energy calculations; modelling of solvation effects; computational transition-metal and organometallic chemistry, homogeneous catalysis

Richard Sessions, University of Bristol - free energy calculations; simulation software development; protein folding; homology modelling; protein-ligand docking

Paul Sherwood, Daresbury Laboratory - quantum chemical and QM/MM method development, with application to biological and inorganic catalytic systems

Chris-Kriton Skylaris, University of Southampton - computational study of properties and processes in materials, with particular emphasis on nanostructures and biological molecules; development of theory and computer algorithms for large-scale quantum mechanical calculations as well as QM/MM

Bill Smith, Daresbury Laboratory - molecular simulation of materials and biomolecular systems; DL_POLY

Lorna Smith, University of Oxford - protein structure and folding; non-native protein conformations; MD simulations

Mike Sutcliffe, University of Manchester - biological processes mediated by proteins: biological catalysis, electron transfer, protein transfer, ion transport

Katherine Thompson, Birkbeck College, University of London - excited states of nucleic acids and proteins; reactions of biomolecules

Irina Tikhonova, Queens University Belfast - molecular modelling, computer-aided drug design, MD, QSAR, GPCRs

Maya Topf, Birkbeck College - computational structural biology, molecular dynamics, comparative modelling, docking

Peter Varnai, University of Sussex - computational biophysics, free energy calculations, conformational changes in DNA

David Wales, University of Cambridge - energy landscapes, rare events, global optimisation

Jim Warwicker, University of Manchester - structural bioinformatics; modelling pH dependence; modelling redox potential

Ian Williams, University of Bath - Mechanism, catalysis, solvation, isotope effects; glycosides; methyl transfer

Mark Williams, Birkbeck College, University of London - protein-ligand interactions; drug design; free energy; stochastic simulation methods; macromolecular assemblies; the extended interface

Martyn Winn, STFC Daresbury Laboratory - epidermal growth factor receptors, coarse-grained simulation, experimental determination of structure

Mire Zloh, School of Pharmacy, University of London, UK - molecular dynamics and modelling; design of biodegradable polymers; mechanism of MDR inhibition; ligand-polymer interactions

 

non-UK modelling groups

Vildan Adar, Hacettepe University, Turkey - MD simulation, computational studies, drug design

Canan Atilgan, Sabanci University, Istanbul, Turkey - polymer and protein dynamics; theoretical and computational investigation of complex molecular systems

Marc Baaden, IBPC, France - membrane proteins, enzyma catalysis, virtual reality, molecular dynamics

Nathan Baker, Washington University in St Louis, US - computational solvation and electrostatics, membrane biophysics, statistical mechanics

Alexandre Bonvin, Utrecht University, The Netherlands - protein structure and dynamics; biomolecular interactions; NMR spectroscopy; Structural Biology

Ramon Crehuet, Institute for Advanced Chemistry of Catalunya, Spain - enzyme catalysis, dynamics-function relationships in enzymes, biological chemistry

Tim Clark, University of Erlangen-Nuremberg - signal transduction, enzyme reaction mechanisms

Odon Farkas, Eotvos University, Budapest, Hungary - modelling large molecules; numerical methods and program development in the field of geometry optimization; conformational analysis by computational and chiroptical methods; distance geometry problems in chemical structure determination

Mario Fragata, University of Quebec at Trois-Rivieres, Canada - biological electron transfer in photosynthesis

Jiali Gao, University of Minnesota, US - development of novel combined QM/MM methods to study chemical and biological reactions; understanding the origin of enzyme catalysis; modelling the diffusion and interactions of macromolecular particles in cellular environment

Alfonso Garcia-Sosa, University of Tartu, Estonia - computer-aided drug discovery and design, biomolecular simulation

Jan Jensen, University of Copenhagen, Denmark - biomolecular modelling, structural bioinformatics, QM/MM

Johannes Kästner University of Stuttgart, Germany - QM/MM, geometry optimization of large systems, umbrella sampling / umbrella integration

Bogdan Lesyng, University of Warsaw, Poland - structure and function of biomolecules; free energy simulations

David Lloyd, Trinity College Dublin, Ireland - use of structure and ligand-based design technologies to rationally tailor small molecules for the modulation of therapeutically relevant biological macromolecules enzymes and receptors

Alessio Lodola, University of Parma, Italy - drug design, QSAR, biomolecular simulation

Fabio Mammano, University of Padua, Italy - gap junction channels

Andy McCammon, University of California at San Diego, US - molecular dynamics; brownian dynamics; atomistic and course-grained models

Bruce Milne, University of Porto, Portugal - protein kinase C, marine natural products, classical molecular dynamics, DFT/TD-DFT

Stefano Moro, University of Padova, Italy - molecular modelling, drug design, QSAR, virtual screening

Craig Morton, St Vincents Institute, Australia - modelling and simulation of protein-ligand interactions; crystallography; NMR, drug design

Cameron Mura, University of Virginia, US - crystallography, molecular biophysics, structural and computational biology of protein/RNA complexes

Modesto Orozco, University of Barcelona, Spain - methodological developments; studies on small models; studies on proteins; studies on nucleic acids; bioinformatics

Angel Ortiz, Autonomous University of Madrid, Spain - computational genomics; structural bioinformatics; receptor-based drug design

Dietmar Paschek, University of Dortmund, Germany - protein folding, solvent mediated interactions

Richard Sadus, Swinbourne University of Technology, Australia - use of Monte Carlo, equilibrium molecular dynamics and non-equilibrium molecular dynamics techniques to provide fundamental insights into natural phenomena at the atomic level, e.g. phase equilibria, transport phenomena and nanotechnology

Tamar Schlick, New York University, US - understanding how the structure and motion of complex biological systems regulates fundamental biological functions; large-scale and long-time simulation studies; energetics and reaction kinetics

Anna Shestopalova, National Academy of Scienes of Ukraine, Ukraine - molecular dynamics and monte carlo simulations; phsycial properties and hydration of DNA; DNA-ligand interaction; drug design

Pedro Silva, Universidade Fernando Pessoa, Portugal - DFT investigations of enzyme reaction mechanisms, homology modelling

Christopher Smith, University of California, San Diego, US - DNA/peptide sequence analysis

Tereza Soares, Pacific Northwest National Lab - MD simulations of lipopolysaccarides and enzyme confinement

Jan Steyaert, Vriji Universiteit Brussel, Belgium - investigating structure and properties of proteins, particularly enzymes using experimental and computational approaches

Renjith Thomas, St Berchmans College, Kerala, India - quantum mechanical calculations; modelling of biological systems; chemoinformatics

Chandra Verma, Bioinformatics Insitute, Singapore - MD simulations; protein, peptide and small molecule design; structure, function and dynamics of biomolecules

Candice Viddal, University of Manitoba, Canada - MD simulations for free energy calculations, enzyme cataysis

Wolfgang Wenzel, Institute for Nanotechnology, Karlsruhe, Germany - protein folding; protein structure prediction; protein-protein docking; protein-ligand docking; drug discovery; bionanomaterials

Chung Wong, University of Missouri-Saint Louis, US - niomolecular simulations, computer-aided molecular design, protein kinases and phosphates

Tom Woolf, Johns Hopkins University, US - membrane protein structure and function; G-protein coupled receptors; new methods for sampling bio-molecular systems; mean field representations of the lipid environment